---
description: Compare FreshBooks vs Checkrun. Learn more about each of the software’s price, features, and helpful software reviews for South African business users.
image: https://gdm-localsites-assets-gfprod.imgix.net/images/capterra/og_logo-e5a8c001ed0bd1bb922639230fcea71a.png?auto=format%2Cenhance%2Ccompress
title: Compare FreshBooks vs Checkrun - Capterra South Africa 2026
---

Breadcrumb: [Home](/) > [Payroll Software](/directory/30202/payroll/software) > [FreshBooks \<span\>vs\</span\> Checkrun](https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun)

# Compare FreshBooks vs Checkrun

Canonical: https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun

> Detailed comparison between FreshBooks and Checkrun. Check ratings, reviews, pricing, and features to make the best decision for your business.

-----

## At a Glance

| Metric | FreshBooks | Checkrun |
| **Overall rating** | 4.5/5 | 4.7/5 |
| **Total Reviews** | 4506 | 24 |
| **Starting Price** | R68,00 | US$50,00 |
| **Free Trial** | Yes | Yes |
| **Free Version** | No | Yes |
| **Deployment** | Cloud, SaaS, Web-based, Mac (Desktop), Windows (Desktop), Android (Mobile), iPhone (Mobile), iPad (Mobile) | Cloud, SaaS, Web-based, Mac (Desktop), Windows (Desktop), Chromebook (Desktop), Android (Mobile), iPhone (Mobile), iPad (Mobile) |
| **Support** | Email/Help Desk, FAQs/Forum, Knowledge Base, Phone Support, Chat | Email/Help Desk, FAQs/Forum, Knowledge Base, Phone Support, 24/7 (Live rep), Chat |
| **Training** | Live Online, Webinars, Documentation, Videos | Live Online, Webinars, Documentation, Videos |

## Best for

### FreshBooks

FreshBooks is cloud based accounting designed to help small businesses in information technology, legal, creative, marketing and construction, among other sectors.

### Checkrun

QuickBooks Online Users&#10;Proadvisors&#10;Small Businesses&#10;Accountants&#10;Accounts Payable&#10;Law Firms&#10;QuickBooks Online&#10;Construction Business&#10;Professional-industry&#10;Law Firms&#10;Automotive &#10;Property Management

## Key features

### FreshBooks

- ACH Payment Processing
- Accounting
- Activity Dashboard
- Alerts/Notifications
- Bank Reconciliation
- Billing & Invoicing
- Electronic Payments
- Expense Tracking
- Financial Management
- Hourly Billing
- Invoice Processing
- Mobile Access
- Partial Payments
- Receipt Management
- Recurring Payments
- Reporting/Analytics
- Status Tracking
- Third-Party Integrations
- Vendor Management

### Checkrun

- ACH Payment Processing
- Accounting
- Activity Dashboard
- Alerts/Notifications
- Bank Reconciliation
- Billing & Invoicing
- Customizable Reports
- Electronic Payments
- Expense Tracking
- Financial Management
- Invoice Processing
- Mobile Access
- Receipt Management
- Recurring Payments
- Reporting/Analytics
- Status Tracking
- Third-Party Integrations
- Vendor Management

## Links

- [View FreshBooks Profile](https://www.capterra.co.za/software/142390/freshbooks)
- [View Checkrun Profile](https://www.capterra.co.za/software/218218/checkrun)
- [View Original Comparison](https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun)

-----

## Structured Data

<script type="application/ld+json">
  {"@context":"https://schema.org","@graph":[{"name":"Compare FreshBooks vs Checkrun - Capterra South Africa 2026","description":"Compare FreshBooks vs Checkrun. Learn more about each of the software’s price, features, and helpful software reviews for South African business users.","url":"https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun","about":[{"@id":"https://www.capterra.co.za/software/142390/freshbooks#software"},{"@id":"https://www.capterra.co.za/software/218218/checkrun#software"}],"breadcrumb":{"@id":"https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun#breadcrumblist"},"@id":"https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun#webpage","@type":["WebPage","CollectionPage"],"isPartOf":{"@id":"https://www.capterra.co.za/#website"},"inLanguage":"en-ZA","publisher":{"@id":"https://www.capterra.co.za/#organization"}},{"name":"FreshBooks","description":"FreshBooks is a cloud-based accounting software designed for small businesses. It offers features such as invoicing, time tracking, expense management, and financial reporting, allowing users to streamline their financial operations. It enables billing and payments, with the ability to automate recurring invoices, accept online payments, and set up late payment reminders. The expenses feature provides mobile receipt scanning, bank account imports, and automated expense categorization, keeping financial records organized and up-to-date.","image":"https://gdm-catalog-fmapi-prod.imgix.net/ProductScreenshot/11269225-5ab1-4636-89b4-c6ea515aeab4.jpeg","url":"https://www.capterra.co.za/software/142390/freshbooks","@id":"https://www.capterra.co.za/software/142390/freshbooks#software","@type":"SoftwareApplication","publisher":{"@id":"https://www.capterra.co.za/#organization"},"applicationCategory":"BusinessApplication","aggregateRating":{"@type":"AggregateRating","ratingValue":4.5,"bestRating":5,"ratingCount":4506},"offers":{"price":"68","@type":"Offer","priceCurrency":"ZAR"},"operatingSystem":"Cloud, Apple, Windows, Android, Platform ios, Platform ipad"},{"name":"Checkrun","description":"Checkrun by AP Technology is a cloud-based check printing and payment automation solution built for QuickBooks Online users who want a faster, more secure way to manage business payments. With Checkrun, teams can schedule and issue checks or ACH payments based on business and vendor preferences, all from one centralized platform.\n\nUsers can print checks remotely or in-office, approve and sign checks on the go with the Checkrun mobile app, or use the convenient print-and-mail service to save time and reduce manual work. By eliminating extra bank visits and manual approval steps, Checkrun helps businesses streamline accounts payable and close transactions faster.\n\nCheckrun supports multiple business accounts and includes automated Positive Pay fraud protection for added security. Ideal for accountants, bookkeepers, and growing businesses, Checkrun is trusted across industries including law firms, real estate, nonprofit, insurance, automotive, and staffing.","image":"https://gdm-catalog-fmapi-prod.imgix.net/ProductScreenshot/40735152-db21-4b75-83cb-02a6e2a584e6.png","url":"https://www.capterra.co.za/software/218218/checkrun","@id":"https://www.capterra.co.za/software/218218/checkrun#software","@type":"SoftwareApplication","publisher":{"@id":"https://www.capterra.co.za/#organization"},"applicationCategory":"BusinessApplication","aggregateRating":{"@type":"AggregateRating","ratingValue":4.7,"bestRating":5,"ratingCount":24},"offers":{"price":"50","@type":"Offer","priceCurrency":"USD"},"operatingSystem":"Cloud, Apple, Windows, Chrome, Android, Platform ios, Platform ipad"},{"@id":"https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun#breadcrumblist","@type":"BreadcrumbList","itemListElement":[{"name":"Home","position":1,"item":"/","@type":"ListItem"},{"name":"Payroll Software","position":2,"item":"/directory/30202/payroll/software","@type":"ListItem"},{"name":"FreshBooks vs Checkrun","position":3,"item":"https://www.capterra.co.za/compare/142390/218218/freshbooks/vs/checkrun","@type":"ListItem"}]}]}
</script>
